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1.
Front Immunol ; 12: 676627, 2021.
Article En | MEDLINE | ID: mdl-34168646

Merkel cell polyomavirus (MCPyV), a small DNA tumor virus, has been detected in Merkel cell carcinoma (MCC) and in normal tissues. Since MCPyV infection occurs in both MCC-affected patients and healthy subjects (HS), innovative immunoassays for detecting antibodies (abs) against MCPyV are required. Herein, sera from HS were analyzed with a novel indirect ELISA using two synthetic peptides mimicking MCPyV capsid protein epitopes of VP1 and VP2. Synthetic peptides were designed to recognize IgGs against MCPyV VP mimotopes using a computer-assisted approach. The assay was set up evaluating its performance in detecting IgGs anti-MCPyV on MCPyV-positive (n=65) and -negative (n=67) control sera. Then, the ELISA was extended to sera (n=548) from HS aged 18-65 yrs old. Age-specific MCPyV-seroprevalence was investigated. Performance evaluation indicated that the assay showed 80% sensitivity, 91% specificity and 83.9% accuracy, with positive and negative predictive values of 94.3% and 71%, respectively. The ratio expected/obtained data agreement was 86%, with a Cohen's kappa of 0.72. Receiver-operating characteristic (ROC) curves analysis indicated that the areas under the curves (AUCs) for the two peptides were 0.82 and 0.74, respectively. Intra-/inter-run variations were below 9%. The overall prevalence of serum IgGs anti-MCPyV in HS was 62.9% (345/548). Age-specific MCPyV-seroprevalence was 63.1% (82/130), 56.7% (68/120), 64.5% (91/141), and 66.2% (104/157) in HS aged 18-30, 31-40, 41-50 and 51-65 yrs old, respectively (p>0.05). Performance evaluation suggests that our indirect ELISA is reliable in detecting IgGs anti-MCPyV. Our immunological data indicate that MCPyV infection occurs asymptomatically, at a relatively high prevalence, in humans.


Antibodies, Viral/blood , Enzyme Assays/methods , Immunoglobulin G/blood , Merkel cell polyomavirus/immunology , Oncogenic Viruses/immunology , Polyomavirus Infections/blood , Polyomavirus Infections/diagnosis , Tumor Virus Infections/blood , Tumor Virus Infections/diagnosis , Adult , Antibodies, Viral/immunology , Asymptomatic Infections , Capsid Proteins/immunology , Computer Simulation , Data Accuracy , Diagnosis, Computer-Assisted , Enzyme-Linked Immunosorbent Assay/methods , Epitopes/immunology , Female , Healthy Volunteers , Humans , Immunoglobulin G/immunology , Male , Middle Aged , Polyomavirus Infections/virology , Sensitivity and Specificity , Seroepidemiologic Studies , Tumor Virus Infections/virology
2.
Viruses ; 13(2)2021 02 23.
Article En | MEDLINE | ID: mdl-33672313

BACKGROUND: Kidney transplant recipients (KTRs) are exposed to a high risk of BK polyomavirus (BKPyV) replication, which in turn may lead to graft loss. Although the microRNAs (miRNAs) bkv-miR-B1-3p and bkv-miR-B1-5p are produced during the viral cycle, their putative value as markers of viral replication has yet to be established. In KTRs, the clinical relevance of the changes over time in BKPyV miRNA levels has not been determined. METHODS: In a retrospective study, we analyzed 186 urine samples and 120 plasma samples collected from 67 KTRs during the first year post-transplantation. Using a reproducible, standardized, quantitative RT-PCR assay, we measured the levels of bkv-miR-B1-3p and bkv-miR-B1-5p (relative to the BKPyV DNA load). RESULTS: Detection of the two miRNAs had low diagnostic value for identifying patients with DNAemia or for predicting DNAuria during follow-up. Seven of the 14 KTRs with a sustained BKPyV infection within the first year post-transplantation showed a progressive reduction in the DNA load and then a rapid disappearance of the miRNAs. DNA and miRNA loads were stable in the other seven KTRs. CONCLUSIONS: After the DNA-based diagnosis of BKPyV infection in KTRs, bkv-miR-B1-3p and bkv-miR-B1-5p levels in the urine might be valuable markers for viral replication monitoring and thus might help physicians to avoid an excessive reduction in the immunosuppressive regimen.


BK Virus/physiology , MicroRNAs/genetics , Polyomavirus Infections/virology , Postoperative Complications/virology , RNA, Viral/genetics , Adult , Aged , BK Virus/genetics , Biomarkers/blood , Biomarkers/urine , Female , Humans , Kidney Transplantation/adverse effects , Kidney Transplantation/statistics & numerical data , Male , MicroRNAs/blood , MicroRNAs/urine , Middle Aged , Polyomavirus Infections/blood , Polyomavirus Infections/etiology , Polyomavirus Infections/urine , Postoperative Complications/blood , Postoperative Complications/etiology , Postoperative Complications/urine , RNA, Viral/blood , RNA, Viral/urine , Retrospective Studies , Transplant Recipients/statistics & numerical data , Viral Load , Virus Replication
3.
Sci Rep ; 11(1): 2468, 2021 01 28.
Article En | MEDLINE | ID: mdl-33510329

BK virus associated nephropathy (BKN) is an important cause of kidney allograft failure. In a cohort of paediatric kidney transplant recipients, we aimed to understand the incidence and clinical outcome associated with BKN, as well as identify risk factors for BKN and BK viraemia development. We retrospectively analysed all patients who received a kidney transplant and received follow up care in our centre between 2009-2019. Among 106 patients included in the study (mean follow up 4.5 years), 32/106 (30.2%) patients experienced BK viraemia. The incidence of BKN was 7/106 (6.6%). The median time of BK viraemia development post-transplant was 279.5 days compared to 90.0 days for BKN. Development of BKN was associated with younger age at transplantation (p = 0.013). Development of BK viraemia was associated with negative recipient serology for cytomegalovirus (CMV) at time of transplantation (p = 0.012) and a higher net level of immunosuppression (p = 0.039). There was no difference in graft function at latest follow up between those who experienced BKN and those without BKN. This study demonstrates that BK virus infection is associated with younger age at transplantation, CMV negative recipient serostatus and higher levels of immunosuppression. Judicious monitoring of BK viraemia in paediatric transplant recipients, coupled with timely clinical intervention can result in similar long-term outcomes for BKN patients compared to controls.


BK Virus/metabolism , Graft Rejection , Kidney Diseases , Kidney Transplantation , Polyomavirus Infections , Aftercare , Age Factors , Child , Female , Graft Rejection/blood , Graft Rejection/epidemiology , Graft Rejection/virology , Humans , Incidence , Kidney Diseases/blood , Kidney Diseases/epidemiology , Kidney Diseases/etiology , Kidney Diseases/virology , Male , Polyomavirus Infections/blood , Polyomavirus Infections/epidemiology , Polyomavirus Infections/etiology , Retrospective Studies , Viremia/epidemiology , Viremia/etiology
4.
Exp Clin Transplant ; 19(2): 104-109, 2021 02.
Article En | MEDLINE | ID: mdl-31801449

OBJECTIVES: BK polyomavirus can infect healthy individuals; however, in renal transplant recipients, it can cause nephropathy, which can lead to renal allograftfailure. There are currently no effective antiviral agents against BK polyomavirus. Surveillance after kidney transplant for BK polyomavirus is the only means to prevent allograft failure. Transplant centers routinely screen for BK polyomavirus in either urine or blood. If BK polyomavirus replication occurs, itis usually detected first in urine, which is followed by detection in blood in a subset of cases. Screening for BK polyomavirus in urine has the potential for earlier detection of viralreactivation.However, not all patients with BK polyomavirus in urine will progress to BK viremia. Therefore, adding urine screening could increase the cost oftests without a clear clinical benefit. MATERIALS AND METHODS: We conducted an analysis of BK polyomavirus screening methods at 2 different centers and compared their clinical outcomes and efficiency of testing. RESULTS: We analyzed 209 patientswith BK polyomavirus reactivation after kidney transplant at 2 different institutions from 2008 to 2018. BK polyomavirus reactivation in blood was detected earlierifthe patient was screened by urine screening protocol. However, measurable clinical outcomes were similarin all groups with different screening methods. CONCLUSIONS: Although screening for BK polyomavirus in urine did detect viralreactivation earlier,there were no differences in graft or clinical outcomes when either the urine or blood screening method was used.


BK Virus , Kidney Transplantation , Polyomavirus Infections/diagnosis , BK Virus/isolation & purification , Humans , Kidney , Kidney Transplantation/adverse effects , Polyomavirus Infections/blood , Polyomavirus Infections/urine , Viremia/diagnosis , Virus Activation
5.
J Med Virol ; 93(6): 3871-3879, 2021 06.
Article En | MEDLINE | ID: mdl-32940913

BK polyomavirus-associated nephropathy (PyVAN) is responsible for a significant percentage of transplanted kidneys prematurely terminating their function. Its occurrence is closely related to the intensity of immunosuppressive therapy. In a group of 161 newly transplanted patients, we prospectively evaluated 457 protocol renal biopsies performed within the first year after transplantation. Using the calcineurin inhibitors (CI) nephrotoxicity score, the incidence of nephrotoxicity was monitored as a manifestation of excessive immunosuppression. Findings were correlated with clinical evidence of active BK polyomavirus (BKPyV) replication and PyVAN. Compared to the normal histology, nephrotoxicity was associated with more frequent BKPyV viremia and viruria (p = .01 and p < .01, respectively) and more common occurrence of PyVAN. The persistence of toxicity in the subsequent biopsy proved to be a negative risk factor of viremia and viruria (p = .03 and p < .01, respectively), independently of the initial BKPyV status. Toxicity could also be used as a predictor of viremia and viruria (p = .04 and p < .01, respectively) even in the absence of viral replication at the time of initial biopsy. The early histological manifestation of CI nephrotoxicity was associated with significant BKPyV reactivation in the risky first posttransplant year.


BK Virus/physiology , Calcineurin Inhibitors/adverse effects , Kidney Diseases/chemically induced , Kidney Transplantation/adverse effects , Kidney/drug effects , Virus Replication/drug effects , Adolescent , Adult , Aged , BK Virus/drug effects , Biopsy , Female , Humans , Immunosuppression Therapy , Incidence , Kidney/pathology , Kidney/virology , Male , Middle Aged , Polyomavirus Infections/blood , Polyomavirus Infections/urine , Polyomavirus Infections/virology , Prospective Studies , Risk Factors , Transplant Recipients , Tumor Virus Infections/virology , Viremia , Young Adult
6.
Sci Rep ; 10(1): 22406, 2020 12 29.
Article En | MEDLINE | ID: mdl-33376243

BK polyomavirus (BKPyV) and cytomegalovirus (CMV) are the main viral pathogens affecting the graft and recipient outcome after allogenic kidney transplantation. It has recently been found that infection with both viruses has a greater impact on kidney graft function than a single infection. We retrospectively analyzed a cohort of 723 recipients who received kidney transplantation between 2007 and 2015 after living and postmortal donation for differences in risk and outcome parameters regarding BKPyV (DNAemia) and CMV (CMV DNAemia) co-infection compared to sole viremias and to patients without viremia. Of all kidney allograft recipients in our cohort, 8.2% developed co-infection with BKPyV DNAemia and CMV DNAemia, 15.1% showed BKPyV viremia alone and 25.2% sole CMV DNAemia. Acute rejection was closely linked with co-infection (multivariable analysis, p = 0.001). Despite the fact that the estimated glomerular filtration rate of patients with co-infection was noticeably reduced compared to patients with BKV or CMV infection alone, transplant survival and patient survival were not significantly reduced. Co-infection with BKPyV and CMV in kidney transplanted patients is significantly associated with inferior allograft function. Since co-infection is strongly associated with acute rejection, co-infected individuals should be considered a risk collective.


BK Virus/metabolism , Coinfection , Cytomegalovirus Infections , Cytomegalovirus/metabolism , DNA, Viral/blood , Kidney Transplantation , Polyomavirus Infections , Tumor Virus Infections , Adult , Aged , Cytomegalovirus Infections/blood , Cytomegalovirus Infections/mortality , Disease-Free Survival , Female , Follow-Up Studies , Humans , Male , Middle Aged , Polyomavirus Infections/blood , Polyomavirus Infections/mortality , Survival Rate , Tumor Virus Infections/blood , Tumor Virus Infections/mortality
7.
Int J Mol Sci ; 21(21)2020 Oct 27.
Article En | MEDLINE | ID: mdl-33121182

Merkel cell polyomavirus (MCPyV) viral protein 1 (VP1) is the capsid protein that mediates virus attachment to host cell receptors and is the major immune target. Given the limited data on MCPyV VP1 mutations, the VP1 genetic variability was examined in 100 plasma and 100 urine samples from 100 HIV+ individuals. Sequencing of VP1 DNA in 17 urine and 17 plasma specimens, simultaneously MCPyV DNA positive, revealed that 27 samples displayed sequences identical to VP1 of MCC350 strain. VP1 from two urine specimens had either Thr47Ser or Ile115Phe substitution, whereas VP1 of one plasma contained Asp69Val and Ser251Phe substitutions plus deletion (∆) of Tyr79. VP1 DNA in the remaining samples had mutations encoding truncated protein. Three-dimensional prediction models revealed that Asp69Val, Ser251Phe, and Ile115Phe caused neutral effects while Thr47Ser and Tyr79∆ produced a deleterious effect reducing VP1 stability. A549 cells infected with urine or plasma samples containing full-length VP1 variants with substitutions, sustained viral DNA replication and VP1 expression. Moreover, medium harvested from these cells was able to infect new A549 cells. In cells infected by samples with truncated VP1, MCPyV replication was hampered. In conclusion, MCPyV strains with unique mutations in the VP1 gene are circulating in HIV+ patients. These strains display altered replication efficiency compared to the MCC350 prototype strain in A549 cells.


Amino Acid Substitution , Capsid Proteins/chemistry , HIV Infections/virology , Merkel cell polyomavirus/physiology , Polyomavirus Infections/virology , A549 Cells , Adult , Aged , Capsid Proteins/genetics , Cross-Sectional Studies , Female , HIV Infections/blood , HIV Infections/urine , HIV-1/pathogenicity , Humans , Male , Merkel cell polyomavirus/genetics , Middle Aged , Models, Molecular , Plasma/virology , Polyomavirus Infections/blood , Polyomavirus Infections/genetics , Polyomavirus Infections/urine , Protein Conformation , Protein Stability , Urine/virology , Virus Replication , Young Adult
8.
Viruses ; 12(8)2020 07 29.
Article En | MEDLINE | ID: mdl-32751274

To investigate the relationship between neutralization escape and persistent high-level BK polyomavirus replication after kidney transplant (KTx), VP1 sequences were determined by Sanger and next-generation sequencing in longitudinal samples from KTx recipients with persistent high-level viruria (non-controllers) compared to patients who suppressed viruria (controllers). The infectivity and neutralization resistance of representative VP1 mutants were investigated using pseudotype viruses. In all patients, the virus population was initially dominated by wild-type VP1 sequences, then non-synonymous VP1 mutations accumulated over time in non-controllers. BC-loop mutations resulted in reduced infectivity in 293TT cells and conferred neutralization escape from cognate serum in five out of six non-controller patients studied. When taken as a group, non-controller sera were not more susceptible to neutralization escape than controller sera, so serological profiling cannot predict subsequent control of virus replication. However, at an individual level, in three non-controller patients the VP1 variants that emerged exploited specific "holes" in the patient's humoral response. Persistent high-level BK polyomavirus replication in KTx recipients is therefore associated with the accumulation of VP1 mutations that can confer resistance to neutralization, implying that future BKPyV therapies involving IVIG or monoclonal antibodies may be more effective when used as preventive or pre-emptive, rather than curative, strategies.


BK Virus/genetics , BK Virus/immunology , Capsid Proteins/genetics , Mutation , Polyomavirus Infections/urine , Adult , Aged , Animals , Chlorocebus aethiops , Female , HEK293 Cells , Humans , Immune Evasion , Kidney Transplantation/adverse effects , Longitudinal Studies , Male , Middle Aged , Neutralization Tests , Observational Studies as Topic , Polyomavirus Infections/blood , Polyomavirus Infections/immunology , Prospective Studies , Retrospective Studies , Vero Cells , Viral Load , Virus Replication
9.
Transplant Proc ; 52(6): 1762-1768, 2020.
Article En | MEDLINE | ID: mdl-32611487

BACKGROUND: Prevention and early detection of BK polyomavirus (BKV) infection is important for long-term kidney graft survival; hence, pretransplant screening methods are essential to identify recipients at high risk for BKV infection. This study investigated the association of pretransplant donor and recipient BKV antibody status with the occurrence of post-transplant BKV infection. METHODS: We prospectively enrolled 47 adult living donor kidney transplant pairs from December 2014 to January 2016. Recipient and donor pretransplant BKV antibody titer was measured by hemagglutination inhibition (HI) test. Donor and recipient median HI titer of 1:20 was used as a cutoff to define seropositivity. Recipients were divided into 2 groups (BKV antibody donor-seropositive/recipient-seronegative (D+/R-) and non-D+/R-). Urinary cytology was used to screen for BKV infection. Plasma polymerase chain reaction testing for BKV DNA was used when decoy cells in urine were persistently detected. RESULTS: Nine (19.2%) of 47 patients belonged to the D+/R- group. Decoy cells were observed in 32 recipients (68.1%) during follow-up. BK viremia occurred in 3 (6.4%) cases. The maximum decoy cell count was significantly higher in the D+/R- group than in the non-D+/R- group (P = .0002). Decoy-cell-free survival was significantly shorter in the D+/R- group (P = .0220). Multivariate analysis identified only BKV antibody serostatus as an independent risk factor for decoy cell appearance (P = .0491). CONCLUSIONS: Pretransplant donor and recipient BKV antibody status was associated with higher maximum decoy cell count and shorter decoy-cell-free survival after kidney transplantation.


Antibodies, Viral/blood , BK Virus/immunology , Postoperative Complications/immunology , Renal Insufficiency/blood , Tissue Donors/statistics & numerical data , Adult , Antibodies, Viral/immunology , Female , Humans , Kidney/immunology , Kidney/virology , Kidney Transplantation/adverse effects , Male , Middle Aged , Pilot Projects , Polyomavirus Infections/blood , Polyomavirus Infections/immunology , Polyomavirus Infections/virology , Postoperative Complications/blood , Postoperative Complications/virology , Preoperative Period , Prospective Studies , Renal Insufficiency/immunology , Renal Insufficiency/surgery , Risk Factors , Transplants/immunology , Transplants/virology , Tumor Virus Infections/blood , Tumor Virus Infections/immunology , Tumor Virus Infections/virology , Viremia/blood , Viremia/immunology , Viremia/virology
10.
Mult Scler Relat Disord ; 41: 101972, 2020 Jun.
Article En | MEDLINE | ID: mdl-32135498

BACKGROUND: There is limited information regarding the daily shedding of JC virus (JCV) in urine and its correlation with serum JCV antibody levels. METHODS: The dynamic expression of JCV in urine and its correlation with JCV antibody status in patients receiving disease modifying therapy for multiple sclerosis were examined in a longitudinal case-control study. JCV antibody index levels were determined using a two-step ELISA (Stratify). JCV shedding in urine samples was determined by quantitative PCR during two 30-day study periods separated by intervals of at least 6 months. RESULTS: Of 42 study subjects (57% female; ages 22-56, average age 39.6 years), 27 (64.3%) were JCV antibody positive (index >0.40) at initial urine collection. Twelve seropositive subjects (44.4%) had detectable JCV in their urine with values ranging from 290 to 5.08 × 108 copies/mL. Daily viral shedding in these patients remained fairly constant throughout the study. Urinary JCV shedding was not detected in any JCV antibody index negative or indeterminate subject. In JCV urinary shedders, the average JCV antibody index was 2.69 (range 1.67-3.57). The average anti-JCV antibody index for the remaining JCV seropositive individuals without viral urinary shedding was 1.35 (range 0.46-3.91). CONCLUSION: MS patients displayed a consistent pattern of JCV shedding over days and months in which higher levels of viruria appeared to have driven higher levels of JCV antibody index. The findings provide additional insights into the dynamic expression of JCV and host response; however, studies in larger populations and of longer duration will be needed to determine their significance to the development of progressive multifocal leukoencephalopathy (PML).


Antibodies, Viral/blood , Immunologic Factors/therapeutic use , JC Virus , Multiple Sclerosis , Polyomavirus Infections , Virus Shedding , Adult , Case-Control Studies , Female , Humans , JC Virus/immunology , Longitudinal Studies , Male , Middle Aged , Multiple Sclerosis/blood , Multiple Sclerosis/drug therapy , Multiple Sclerosis/urine , Polyomavirus Infections/blood , Polyomavirus Infections/immunology , Polyomavirus Infections/urine , Young Adult
11.
Transpl Infect Dis ; 22(2): e13269, 2020 Apr.
Article En | MEDLINE | ID: mdl-32090422

BK polyomavirus (BKPyV) infections with multi-organ involvement are rare. Here, we report for the first time whole genome sequencing data from a patient with systemic BKPyV disease. She presented post stem cell transplantation with graft-vs-host disease, suffered from profound immunosuppression, and developed fatal BKPyV disease of kidneys, lungs, and pancreas. The lytic infection was caused by an episomal BKPyV-Ib strain with canonical structural and receptor encoding gene sequences. However, DNA from all infected tissue sites showed diverse BKPyV-NCCR rearrangements (rr-NCCR) involving the P, Q, and R domains, while largely sparing O and S, carrying initiation sites for early and late BKPyV gene transcripts crucial for viral replication and assembly. Common to all rr-NCCR variants was a break point in Q (position 17-27) that can form the nidus for double DNA strand break formation and gene rearrangements. Metastatic clonal BKPyV spread from kidneys to other organs was not detected. We hypothesize that lack of immune surveillance and a specific NCCR break point promote profound gene rearrangements of NCCR-P, Q, and R with alterations of regulatory feedback loops. As a result, viral replication and pathogenicity are enhanced leading to severe, often fatal systemic disease not caused by the common archetypical BKPyV strains.


BK Virus/genetics , Kidney Diseases/virology , Polyomavirus Infections/blood , Whole Genome Sequencing , DNA, Viral/genetics , Fatal Outcome , Female , Gene Rearrangement , Graft vs Host Disease/etiology , Humans , Immunosuppression Therapy/adverse effects , Polyomavirus Infections/virology , Sequence Analysis, DNA , Stem Cell Transplantation/adverse effects , Tumor Virus Infections/blood , Tumor Virus Infections/virology , Virus Replication , Young Adult
12.
Exp Clin Transplant ; 18(Suppl 1): 51-54, 2020 01.
Article En | MEDLINE | ID: mdl-32008495

OBJECTIVES: The main function of HLA is to present antigens to lymphocytes and to initiate specific immune responses. Autoimmune, viral, allergic, and neurologic diseases have been found to be related to HLA molecules. In renal transplant, the main target of the recipient's immune system is the HLA molecules on the surface of donor cells. HLA also plays a role in the development of an immune response to viral infections. After renal transplant, BK virus infections may occur due to immunosuppression. Here, we investigated the relationship between HLA and BK virus in renal transplant recipients. MATERIALS AND METHODS: This retrospective study investigated HLA-A, HLA-B, and HLA-DR tissue typing before renal transplant. DNA was isolated from whole blood, and tissue typing tests were performed based on polymerase chain reaction. Patients were tested for BK virus posttransplant using DNA isolated from urine and/or plasma samples. RESULTS: We found HLA-B*13 allele to be a protective factor (P < .049; odds ratio: 0.131; 95% confidence interval, 0.017-1.029) and HLA-DRB1*03 allele to be a possible risk factor (P < .029; odds ratio: 2.521; 95% confidence interval, 1.157-5.490) against BK virus. No significant relationships were found between BK virus and age, sex, donor type, and HLA mismatch. CONCLUSIONS: HLA class I molecules are known to be effective against viruses with the help of cytotoxic T cells. HLA-B*13 alleles within the HLA class I molecules were identified as protective factors against BK virus. HLA class II is associated with CD4-positive T cells that help secrete immune system cytokines, playing a role in stimulating and suppressing the immune system. We demonstrated that HLA-DRB1*03 allele could be a risk factor against BK virus. This allele may be associated with immunomodulatory cytokine secretion of the immune system.


BK Virus/genetics , DNA, Viral/blood , HLA Antigens/genetics , Kidney Transplantation/adverse effects , Opportunistic Infections/virology , Polyomavirus Infections/virology , Tumor Virus Infections/virology , BK Virus/immunology , Female , Gene Frequency , HLA Antigens/blood , Host-Pathogen Interactions , Humans , Immunocompromised Host , Immunosuppressive Agents/adverse effects , Male , Opportunistic Infections/blood , Opportunistic Infections/diagnosis , Opportunistic Infections/immunology , Polyomavirus Infections/blood , Polyomavirus Infections/diagnosis , Polyomavirus Infections/immunology , Retrospective Studies , Treatment Outcome , Tumor Virus Infections/blood , Tumor Virus Infections/diagnosis , Tumor Virus Infections/immunology , Viral Load
13.
Diagn Microbiol Infect Dis ; 96(4): 114979, 2020 Apr.
Article En | MEDLINE | ID: mdl-32014346

Costs may hinder the implementation of BK polyomavirus (BKV)-DNAemia screening in resource-limited kidney transplant (KT) centers. We analyzed data from two studies to assess the performance and potential cost saving of a dual-step screening strategy based on the use of a preliminary qualitative semi-nested PCR (snPCR) assay followed by BKV-DNAemia quantification after KT. In the preliminary study, in which 130 samples from 33 KT recipients were screened for BKV-DNAemia, the estimated positive and negative predictive values of snPCR, as compared to quantitative PCR (qPCR), were 88% and 99%, respectively. In the second study, which included 84 KT recipients, BKV-DNAemia was detected by snPCR in 28/472 (5.9%) samples and confirmed by qPCR in 26 samples of 21 (25%) subjects. No graft loss occurred among KT recipients who developed BKV-DNAemia. Cost analyses suggested that this strategy might be a cost saving alternative for BKV-DNAemia screening for some resource-limited settings.


BK Virus/isolation & purification , DNA, Viral/blood , Kidney Transplantation/adverse effects , Polyomavirus Infections/diagnosis , Tumor Virus Infections/diagnosis , Adult , Brazil , Costs and Cost Analysis , Female , Health Resources/economics , Humans , Male , Middle Aged , Pilot Projects , Polyomavirus Infections/blood , Predictive Value of Tests , Prospective Studies , Tumor Virus Infections/blood , Viral Load
16.
J Clin Virol ; 120: 6-11, 2019 11.
Article En | MEDLINE | ID: mdl-31505316

BACKGROUND: While the pathogenicity of the two initially identified Human Polyomaviruses (HPyVs), BK Virus (BKPyV) and JC Virus (JCPyV) has been intensely studied, there is only limited data, on whether the occurrence of the recently discovered HPyVs correlates with high level BKPyV replication and progression towards Polyomavirus associated nephropathy (PVAN). METHODS: Therefore, we performed a comprehensive longitudinal genoprevalence analysis of 13 HPyVs using a novel multiplex assay including 400 serum and 388 urine samples obtained from 99 kidney transplant recipients (KTRs), grouped by quantitative BKPyV DNA loads and evidence of manifest BKPyV associated disease (histologically verified PVAN, high urinary decoy cell levels and concurrent decrease of renal function). RESULTS: In total, 3 different non-BKPyV/JCPyV HPyVs, Human Polyomavirus 9, Merkel Cell Polyomavirus (MCPyV) and Trichodysplasia Spinulosa associated Polyomavirus were detected in 11 blood and 21 urine samples from 21 patients. Although DNAemia of these viruses occurred more frequently during high level BKPyV DNAemia and PVAN, the increase of the detection frequency due to progression of BKPyV replication did not reach statistical significance for blood samples. The positive detection rate of MCPyV in urine, however, was significantly higher during BKPyV DNAemia in 19 KTRs of our cohort who suffered from histologically verified PVAN (p = 0.005). In one individual with PVAN, continuous long-term shedding of MCPyV in urine was observed. CONCLUSION: In our cohort the recently discovered HPyVs HPyV9, TSPyV and MCPyV emerged in blood from KTRs with variable kinetics, while detection of MCPyV DNAuria occurred more frequently during BKPyV DNAemia in patients with PVAN.


BK Virus/physiology , Kidney Diseases/virology , Kidney Transplantation/adverse effects , Polyomavirus Infections/diagnosis , Polyomavirus/physiology , Adult , Aged , BK Virus/isolation & purification , Cohort Studies , DNA, Viral/blood , DNA, Viral/urine , Female , Humans , Kidney Diseases/blood , Kidney Diseases/urine , Longitudinal Studies , Male , Middle Aged , Polyomavirus/isolation & purification , Polyomavirus Infections/blood , Polyomavirus Infections/urine , Polyomavirus Infections/virology , Viral Load , Virus Replication , Virus Shedding , Young Adult
17.
J Vis Exp ; (149)2019 07 13.
Article En | MEDLINE | ID: mdl-31355784

Polyomaviruses, like the BK-polyomavirus (BKPyV), can cause severe pathologies in immunocompromised patients. However, since highly effective antivirals are currently not available, methods measuring the impact of potential antiviral agents are required. Here, a dual fluorescence reporter that allows the analysis of the BKPyV non-coding control-region (NCCR) driven early and late promoter activity was constructed to quantify the impact of potential antiviral drugs on viral gene expression via tdTomato and eGFP expression. In addition, by cloning BKPyV-NCCR amplicons which in this protocol have been exemplarily obtained from the blood-derived DNA of immunocompromised renal transplanted patients, the impact of NCCR-rearrangements on viral gene expression can be determined. Following cloning of the patient derived amplicons, HEK293T cells were transfected with the reporter-plasmids, and treated with potential antiviral agents. Subsequently, cells were subjected to FACS-analysis for measuring mean fluorescence intensities 72 h post transfection. To also test the analysis of drugs that have a potential cell cycle inhibiting effect, only transfected and thus fluorescent cells are used. Since this assay is performed in large T Antigen expressing cells, the impact of early and late expression can be analyzed in a mutually independent manner.


BK Virus/genetics , Regulatory Sequences, Nucleic Acid/genetics , Transcription, Genetic , Antiviral Agents/pharmacology , BK Virus/drug effects , BK Virus/isolation & purification , BK Virus/metabolism , Flow Cytometry , HEK293 Cells , Humans , Luminescent Proteins/genetics , Luminescent Proteins/metabolism , Polyomavirus Infections/blood , Polyomavirus Infections/virology , Transcription, Genetic/drug effects , Tumor Virus Infections/blood , Tumor Virus Infections/virology
18.
Transplant Proc ; 51(5): 1410-1414, 2019 Jun.
Article En | MEDLINE | ID: mdl-31056251

BACKGROUND: Graft biopsy is the gold standard for diagnosis of BK polyomavirus-associated nephropathy (BKPyVAN), and polymerase chain reaction is the most specific screening technique. Development of a noninvasive, cost-effective marker for BKPyVAN is important. METHODS: We reviewed 492 adult kidney transplant patients. We investigated peripheral blood lymphocyte (PBL) count and urinary cytology at graft biopsy in patients with BKVPyAN (n = 21), acute T-cell-mediated rejection (n = 79), and no evidence of acute rejection (n = 149). We performed univariate and multivariate logistic regression and receiver operating characteristics analyses to compare the test performance of PBL count, urinary cytology, and their combination for diagnosis of BKPyVAN. RESULTS: The PBL count at biopsy was significantly lower in the BKPyVAN group than the acute T-cell-mediated rejection and no acute rejection groups (959 ± 290/µL, 1433 ± 673/µL, and 1531 ± 549/µL, respectively; P < .01). The PBL count was 959 ± 290/µL at diagnosis of BKPyVAN and increased to 1123 ± 377/µL, 1238 ± 419/µL, and 1292 ± 491/µL at 1, 2, and 3 months after treatment, respectively (P < .05). On univariate analysis, the area under the curve was significantly higher for the combined model than for PBL and cytology alone (0.930, 0.797, and 0.875, respectively; P < .01). The improved test performance in the combined model remained significant after multivariate adjustment (0.972, 0.844, and 0.928, respectively; P < .01). CONCLUSIONS: Decreased PBL count was found in BKPyVAN, and the predictive performance of the combination of PBL count and urinary cytology was significantly enhanced for diagnosis of BKPyVAN.


Early Diagnosis , Kidney Diseases/diagnosis , Kidney Transplantation , Polyomavirus Infections/diagnosis , Postoperative Complications/diagnosis , Adult , BK Virus/genetics , Female , Humans , Kidney Diseases/virology , Lymphocyte Count , Male , Middle Aged , Polyomavirus Infections/blood , Polyomavirus Infections/urine , Postoperative Complications/virology , Predictive Value of Tests , Tumor Virus Infections/blood , Tumor Virus Infections/diagnosis , Tumor Virus Infections/urine
19.
J Infect Dis ; 220(3): 370-376, 2019 07 02.
Article En | MEDLINE | ID: mdl-30869132

BACKGROUND: BK virus (BKV) is a significant cause of nephropathy in kidney transplantation. The goal of this study was to characterize the course and source of BKV in kidney transplant recipients. METHODS: We prospectively collected pretransplant plasma and urine samples from living and deceased kidney donors and performed BKV polymerase chain reaction (PCR) and immunoglobulin G (IgG) testing on pretransplant and serially collected posttransplant samples in kidney transplant recipients. RESULTS: Among deceased donors, 8.1% (17/208) had detectable BKV DNA in urine prior to organ procurement. BK viruria was observed in 15.4% (6/39) of living donors and 8.5% (4/47) of deceased donors of recipients at our institution (P = .50). BKV VP1 sequencing revealed identical virus between donor-recipient pairs to suggest donor transmission of virus. Recipients of BK viruric donors were more likely to develop BK viruria (66.6% vs 7.8%; P < .001) and viremia (66.6% vs 8.9%; P < .001) with a shorter time to onset (log-rank test, P < .001). Though donor BKV IgG titers were higher in recipients who developed BK viremia, pretransplant donor, recipient, and combined donor/recipient serology status was not associated with BK viremia (P = .31, P = .75, and P = .51, respectively). CONCLUSIONS: Donor BK viruria is associated with early BK viruria and viremia in kidney transplant recipients. BKV PCR testing of donor urine may be useful in identifying recipients at risk for BKV complications.


BK Virus/isolation & purification , Kidney Diseases/virology , Kidney Transplantation/adverse effects , Polyomavirus Infections/virology , Tumor Virus Infections/virology , Adult , Female , Humans , Immunoglobulin G/blood , Kidney/virology , Kidney Diseases/blood , Kidney Diseases/urine , Living Donors , Male , Middle Aged , Polyomavirus Infections/blood , Polyomavirus Infections/urine , Prospective Studies , Transplant Recipients , Tumor Virus Infections/blood , Tumor Virus Infections/urine , Viremia/blood , Viremia/urine , Viremia/virology
20.
Microb Pathog ; 131: 75-80, 2019 Jun.
Article En | MEDLINE | ID: mdl-30910721

Merkel cell polyomavirus (MCPyV) is a rare, aggressive and related to human diseases in immunocompromised patients. MCPyV has been detected in skin neoplasms, various cancers, immunosuppressed patients and immunocompetent individuals. Several studies have confirmed the presence of MCPyV in patients with kidney dysfunction, such as kidney transplant (KTx) and long-term dialysis patients. The aims of this study were to quantify and compare the frequency of MCPyV in whole blood samples from immunocompetent and immunosuppressed patients and healthy blood donors and to compare MCPyV genotypes in a Korean population. DNA from Groups 1, 2, and 3 was screened for MCPyV using polymerase chain reaction (PCR) and quantitative real-time PCR (qPCR) with primer pairs targeting two regions of the large T-antigen. Thirteen of 122 whole-blood samples (12.7%) were positive for MCPyV. The virus was detected in the three groups of patients and healthy donors; specifically, in 5 of 30 (16.7%) KTx patients (Group 1), 6 of 52 (11.5%) dialysis patients (Group 2), and 4 of 40 (10%) healthy donors (Group 3). Low viral DNA loads 4.4-18 copies/µl were observed using qPCR DNA sequences from the two MCPyV-LT regions, which showed high homology with MCPyV sequences belonging to the TKS strain from Japan rather than the Chinese/European/North American strains. The MCPyV DNA was similarly amplified in whole blood from immunocompetent and immunosuppressed patients and healthy donors. This virus may be involved in establishing the persistence of infected peripheral leukocytes in the host, based on the incidence of detection of MCPyV DNA in blood samples from immunocompromised and immunocompetent subjects. This study is the first to identify a Korean MCPyV strain in whole-blood samples from Korean patients with kidney disease and healthy individuals.


Immunocompromised Host , Kidney Diseases/complications , Merkel cell polyomavirus/pathogenicity , Polyomavirus Infections/blood , Tumor Virus Infections/blood , Adolescent , Adult , Aged , Base Sequence , DNA, Viral/blood , DNA, Viral/genetics , DNA, Viral/isolation & purification , Dialysis , Female , Humans , Kidney Transplantation , Male , Merkel cell polyomavirus/genetics , Merkel cell polyomavirus/isolation & purification , Middle Aged , Mutation , Real-Time Polymerase Chain Reaction , Renal Dialysis , Republic of Korea , Sequence Analysis, DNA , Skin Neoplasms , Tumor Virus Infections/virology , Young Adult
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